Journal: Scientific Reports

Article Title: ATP sulfurylase atypical leucine zipper interacts with Cys3 and calcineurin A in the regulation of sulfur amino acid biosynthesis in Cryptococcus neoformans

doi: 10.1038/s41598-023-37556-5

Figure Lengend Snippet: Domains and motifs of ATP sulfurylase in various organisms. ( A ) Schematic representation of the domains present in ATP sulfurylase in C. neoformans (CNAG_04215), A. fumigatus (Afu3g06530), N. crassa (NCU01985), S. cerevisiae (YJR010W), C. albicans (CAWG_00065), H. sapiens (AAC64583), and A. thaliana (AAB09473). The numbers indicate the position of the domains. ATP sulfurylase domain is in green, APS kinase in blue, and leucine zipper in red. Image was generated by DOG 1.0: Illustrator of Protein Domain Structures software . ( B ) Alignment of the amino acid sequence of the putative leucine zipper found at the N-terminus of the ATP sulfurylase in various organisms; the four conserved leucine/isoleucine separated by any of the six amino acids are boxed in blue and indicated by asterisk. The putative PxIxIT motif in C. neoformans is highlighted in pink. The alignment was generated by MegaAlign Software Lasergene (DNA Star).

Article Snippet: The alignment was generated by MegaAlign Software Lasergene (DNA Star).

Techniques: Generated, Software, Sequencing

Journal: Virus Research

Article Title: Molecular detection and phylogenetic analysis of newly emerging foot-and-mouth disease virus type A, Lineage EURO-SA in Egypt in 2022

doi: 10.1016/j.virusres.2022.198960

Figure Lengend Snippet: VP1 Phylogenic analysis of the recently isolated FMDV strains in Egypt. FMDV serotype A/VP1 coding region-based phylogenetic tree. The tree was reconstructed with the neighbor-joining method with 1,000 bootstrap replicates (shown next to the branches) in MEGA11. Phylogeny showed the relationships between the FMDV serotype A isolates from Egypt (lined with red color lines) and other contemporary viruses.

Article Snippet: The sequences were also independently aligned in MEGA11 software ( ) and the rate of nucleotide substitution per site (genetic distance) was estimated in the Megalign module of DNASTAR package.

Techniques: Isolation

Journal: Virus Research

Article Title: Molecular detection and phylogenetic analysis of newly emerging foot-and-mouth disease virus type A, Lineage EURO-SA in Egypt in 2022

doi: 10.1016/j.virusres.2022.198960

Figure Lengend Snippet: VP2, VP3 and VP4 Phylogenic analysis of the recently isolated FMDV isolate in Egypt. FMDV serotypecoding region-based phylogenetic tree A) VP2, B) VP3 and C) VP4. The tree was reconstructed with the neighbor-joining method with 1,000 bootstrap replicates (shown next to the branches) in MEGA11. Phylogeny showed the relationships between the FMDV serotype A recent isolate from Egypt (accession number OP093730 ) (lined with red color lines) and other contemporary viruses.

Article Snippet: The sequences were also independently aligned in MEGA11 software ( ) and the rate of nucleotide substitution per site (genetic distance) was estimated in the Megalign module of DNASTAR package.

Techniques: Isolation